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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15832427_15856027_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15832427 - 15856027
Intron Length:
23601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTTTGTGAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTCCTCAAAC
Flanking Amino Acid:
DLVTPFFCSLQEEEVENFDV
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.4
55
37.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
74.1
0.54
0.9
70.6
33.9
Minor 5ss
36
-1.6
3
41.6
39.6
Minor BPS
74
0.73
1.6
84.51
33.8

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865