About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158330463_158331919_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158330463 - 158331919
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
VEYKSNGQKQFAHFFLPQNA
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
LAMP1
Ensembl Gene ID:
ENSAPLG00000015580
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016252
158329945 - 158339032
9088