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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158337627_158338144_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158337627 - 158338144
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
KTKIIFHFVLNASSDKFFLQ
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
LAMP1
Ensembl Gene ID:
ENSAPLG00000015580
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016252
158329945 - 158339032
9088