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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158338215_158338404_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158338215 - 158338404
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTACGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GATTCTGTAATA
Flanking Amino Acid:
VSTTLPSEAKAPIFEASNNS
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67
44.2
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
80.1
0.68
0.8
76.8
30.7
Minor 5ss
32
-2.1
3.6
47.9
47.8
Minor BPS
57.3
0.22
2
68.94
37.8

Associated Gene:

Gene:
LAMP1
Ensembl Gene ID:
ENSAPLG00000015580
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016252
158329945 - 158339032
9088