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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158340666_158342035_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158340666 - 158342035
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATCATTTTAACT
Flanking Amino Acid:
FVTECHTFMQKIFTEPGTLS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.7
0.58
0.9
66.7
40
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
68.9
0.67
1.2
78.29
38.3

Associated Gene:

Gene:
GRTP1
Ensembl Gene ID:
ENSAPLG00000015320
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015970
158340329 - 158370756
30428