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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158342222_158342333_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158342222 - 158342333
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
CCTCCTGTAATC
Flanking Amino Acid:
CLFIDILPVETVLRIWDCLF
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
85.5
0.8
0.7
80.6
24.7
Minor 5ss
38.1
-1.3
3.4
55.9
48.3
Minor BPS
48.7
-0.1
2
58.67
41.4

Associated Gene:

Gene:
GRTP1
Ensembl Gene ID:
ENSAPLG00000015320
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015970
158340329 - 158370756
30428
ENSAPLT00000040888
158224521 - 158370756
146236