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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158364657_158370083_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158364657 - 158370083
Intron Length:
5427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AACCACCAAACA
Flanking Amino Acid:
GKNSIQKSLKVKRYIRKGIP
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
41.9
-0.6
2
50.51
40

Associated Gene:

Gene:
GRTP1
Ensembl Gene ID:
ENSAPLG00000015320
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040888
158224521 - 158370756
146236
ENSAPLT00000015970
158340329 - 158370756
30428