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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158400566_158402209_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158400566 - 158402209
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTGAACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTGCTTGAACC
Flanking Amino Acid:
ELCNRSMFHGGESAATGSIA
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
39.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
66.9
0.38
0.9
59
36.9
Minor 5ss
24.1
-3
3.2
29.4
43.5
Minor BPS
63.3
0.4
1.6
71.92
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021170
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017344
158390765 - 158421872
31108