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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158402343_158405482_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158402343 - 158405482
Intron Length:
3140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAA
U12 Branch Point Sequence:
CCCACCTTAACG
Flanking Amino Acid:
DNYDAEEREKTYRRWSSEGR
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
60.9
0.27
1
51.6
35
Major PPT
79.7
0.67
0.8
77.7
30.4
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
64.2
0.31
1.5
59.56
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021170
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017344
158390765 - 158421872
31108