Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158409970_158411760_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

158409970 - 158411760

Intron Length:

1791

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGTCC

5'SS Class:

major

3'SS Sequence:

GTATTAATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TATGTATTAATT

Flanking Amino Acid:

CGRMTHNHPTGFLGSLCTAL

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

69.4

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

73.6

0.53

63.7

Minor 5ss

38.1

-1.3

3.2

51.4

45.3

Minor BPS

61.2

0.43

1.7

77.76

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021170

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017344

158390765 - 158421872

31108