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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158418674_158421658_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158418674 - 158421658
Intron Length:
2985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTGTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGCATGACCA
Flanking Amino Acid:
HMATAEAVITDYWCLEDLYR
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
67.6
0.4
1
59.8
40.5
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
46.3
-0.2
2.1
62.34
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021170
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017344
158390765 - 158421872
31108