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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158440071_158444381_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
158440071 - 158444381
Intron Length:
4311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CGGGTTACTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATCC
Flanking Amino Acid:
FAKNPGQKGLVLDSVRYRPD
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
54.9
0.11
1.1
53.4
40.6
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
57.3
0.21
1.8
71.16
40

Associated Gene:

Gene:
DCUN1D2
Ensembl Gene ID:
ENSAPLG00000021253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033139
158438853 - 158452028
13176