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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158444513_158447049_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158444513 - 158447049
Intron Length:
2537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTATGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTATATATAAAT
Flanking Amino Acid:
KEFVDGMTELGCDTTEKLKA
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.3
32.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71.1
0.47
1
65.8
39.7
Minor 5ss
34.4
-1.8
2.8
37.5
40.1
Minor BPS
52.8
0.17
1.9
76.5
39.3

Associated Gene:

Gene:
DCUN1D2
Ensembl Gene ID:
ENSAPLG00000021253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033139
158438853 - 158452028
13176