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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158447219_158450020_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158447219 - 158450020
Intron Length:
2802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTGTTTTGAATT
Flanking Amino Acid:
KLEQLYNRYKDPQDENKIGI
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.3
0.71
0.9
74.9
38.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
60.4
0.41
1.4
72.74
38.8

Associated Gene:

Gene:
DCUN1D2
Ensembl Gene ID:
ENSAPLG00000021253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033139
158438853 - 158452028
13176