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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158464176_158465822_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
158464176 - 158465822
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATAGAG
5'SS Class:
major
3'SS Sequence:
CCTTACAGGTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
ILLKIQSNREIGVNFEAVLR
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
60.9
37.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
49.3
-0
1.2
53.1
40.4
Minor 5ss
32.3
-2
3.4
42.9
44.4
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
TMCO3
Ensembl Gene ID:
ENSAPLG00000014778
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015416
158456422 - 158486161
29740