Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158466010_158466846_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

158466010 - 158466846

Intron Length:

837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTATACATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TTTATGTTAACA

Flanking Amino Acid:

IPRADHHFIKDIVTIGMLSL

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

74.6

41.7

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

65.9

0.36

65.1

40.8

Minor 5ss

43.9

-0.7

3.2

65.5

45.6

Minor BPS

63.7

0.43

2.1

79.58

36.6

Associated Gene:

Gene:

TMCO3

Ensembl Gene ID:

ENSAPLG00000014778

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015416

158456422 - 158486161

29740