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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158466976_158468750_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158466976 - 158468750
Intron Length:
1775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTGAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
LGPSGLNSIKSIVQVETLGE
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.4
0.39
1.2
70.6
38.6
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
TMCO3
Ensembl Gene ID:
ENSAPLG00000014778
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015416
158456422 - 158486161
29740