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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158471896_158478122_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158471896 - 158478122
Intron Length:
6227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATCTTT
5'SS Class:
major
3'SS Sequence:
TATTCCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAGAT
U12 Branch Point Sequence:
TATTCCTTGACA
Flanking Amino Acid:
ISAFIFLMLTITELLDVSME
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72
40.3
Major BPS
62.6
0.31
1
58.7
38.1
Major PPT
76.7
0.6
1
72.8
37.2
Minor 5ss
51.3
0.04
2.8
74.4
41.7
Minor BPS
86.3
1.14
0.9
87.8
29.1

Associated Gene:

Gene:
TMCO3
Ensembl Gene ID:
ENSAPLG00000014778
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015416
158456422 - 158486161
29740