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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158483692_158484275_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158483692 - 158484275
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTACTTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TACTTTTTAAAG
Flanking Amino Acid:
FLTLSVVIMKFVLAVLVLSL
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.4
30.8
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
73.2
0.52
1
74
34.3
Minor 5ss
58.1
0.27
2.3
76
39.6
Minor BPS
60.7
0.2
1.5
60.98
41.1

Associated Gene:

Gene:
TMCO3
Ensembl Gene ID:
ENSAPLG00000014778
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015416
158456422 - 158486161
29740