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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158484426_158486047_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158484426 - 158486047
Intron Length:
1622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTTTTTATTT
Flanking Amino Acid:
ARRAGIISREVYLLILSVTT
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.3
0.68
0.9
77
36.2
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
TMCO3
Ensembl Gene ID:
ENSAPLG00000014778
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015416
158456422 - 158486161
29740