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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158494187_158494848_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
158494187 - 158494848
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTTTAGAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
81.1
0.7
0.8
73.3
37.2
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
49.3
0.03
1.9
77.41
39

Associated Gene:

Gene:
TFDP1
Ensembl Gene ID:
ENSAPLG00000014438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015058
158494183 - 158533103
38921