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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158517863_158522247_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158517863 - 158522247
Intron Length:
4385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGTTTATTT
Flanking Amino Acid:
QSNVNITQQVVISTPQRPSA
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.9
0.56
0.9
70
35.9
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
54.6
0.22
2
76.15
41.3

Associated Gene:

Gene:
TFDP1
Ensembl Gene ID:
ENSAPLG00000014438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015058
158494183 - 158533103
38921