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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158522370_158523964_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158522370 - 158523964
Intron Length:
1595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTAA
5'SS Class:
major
3'SS Sequence:
TGTGTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATCTTCTCAAAT
Flanking Amino Acid:
QTADSSPWSAGKRNKKGEKN
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
36.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69.9
0.45
1
67.5
43
Minor 5ss
37.3
-1.4
3
38
46.9
Minor BPS
60
0.39
1.6
75.64
40.8

Associated Gene:

Gene:
TFDP1
Ensembl Gene ID:
ENSAPLG00000014438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015058
158494183 - 158533103
38921