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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158524131_158524323_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158524131 - 158524323
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ACTATGTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAATG
Flanking Amino Acid:
TDNHISPNESQAYDQKNIRR
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.2
0.52
1
65.2
40.6
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
59.9
0.17
2.1
72.41
40.7

Associated Gene:

Gene:
TFDP1
Ensembl Gene ID:
ENSAPLG00000014438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015058
158494183 - 158533103
38921