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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158529216_158529919_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158529216 - 158529919
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
ATGAAGTTAACT
Flanking Amino Acid:
TVIDCSISNDKFEYLFNFDN
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
83.7
0.76
0.7
77.2
24.9
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
49.5
0.04
2.2
72.27
44.2

Associated Gene:

Gene:
TFDP1
Ensembl Gene ID:
ENSAPLG00000014438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015058
158494183 - 158533103
38921