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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158530087_158530670_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158530087 - 158530670
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
GTTGCAATAACA
Flanking Amino Acid:
VPKALEPYVTEMAQGSISSV
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
52.9
0.09
2
70.69
40.9

Associated Gene:

Gene:
TFDP1
Ensembl Gene ID:
ENSAPLG00000014438
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015058
158494183 - 158533103
38921