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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158541093_158541274_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158541093 - 158541274
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCACGAATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCTTTCACG
Flanking Amino Acid:
LVTTLQTFLTAYTPAAQHLN
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
61
0.25
1
52
41.7
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
65.3
0.34
1.8
70.57
43.2

Associated Gene:

Gene:
ATP4B
Ensembl Gene ID:
ENSAPLG00000014125
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014739
158539128 - 158542835
3708