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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15856138_15871129_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15856138 - 15871129
Intron Length:
14992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAAACT
Flanking Amino Acid:
CMSKLLDGIQDNYTFAQPGI
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.2
0.75
0.7
81.8
30.3
Minor 5ss
38.9
-1.2
2.9
49.9
46.3
Minor BPS
65.6
0.57
1.9
88.65
36.2

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865