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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158571923_158578366_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158571923 - 158578366
Intron Length:
6444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCACTTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTGCAATTAAAA
Flanking Amino Acid:
MGSSSQIPHQGQFAKRKKTS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
77.9
0.63
0.8
71.7
32.6
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
49.3
-0
1.9
64.96
40.4

Associated Gene:

Gene:
TMEM255B
Ensembl Gene ID:
ENSAPLG00000014031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045117
158571535 - 158633625
62091
ENSAPLT00000041955
158571535 - 158633625
62091
ENSAPLT00000026949
158571535 - 158633625
62091