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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158582586_158596535_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158582586 - 158596535
Intron Length:
13950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TATTACTCACTC
Flanking Amino Acid:
IHLVENRRQMLVASIVFISF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.1
36.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
89.1
0.88
0.6
88.3
21.3
Minor 5ss
39.8
-1.1
2.9
48.9
41.6
Minor BPS
49
-0.1
2
64.98
40.5

Associated Gene:

Gene:
TMEM255B
Ensembl Gene ID:
ENSAPLG00000014031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026949
158571535 - 158633625
62091
ENSAPLT00000014619
158571535 - 158633625
62091
ENSAPLT00000041955
158571535 - 158633625
62091