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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158616174_158638041_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158616174 - 158638041
Intron Length:
21868

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCCCGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTTATT
Flanking Amino Acid:
TSHSCPPAEAENHPSSSTDS
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
59.1
45
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
87.8
22.4
Minor 5ss
18.7
-3.6
3.3
16.3
28.1
Minor BPS
69.2
0.69
1.5
86.8
32.8

Associated Gene:

Gene:
GAS6
Ensembl Gene ID:
ENSAPLG00000013696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014318
158615616 - 158672662
57047