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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158621536_158623718_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158621536 - 158623718
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CGTTCCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATGACC
Flanking Amino Acid:
CYCCDLYNCENSEQSSSYYE
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
77.3
31.4
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
64.5
0.44
1.6
75.43
34.6

Associated Gene:

Gene:
TMEM255B
Ensembl Gene ID:
ENSAPLG00000014031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037000
158571535 - 158633625
62091
ENSAPLT00000026949
158571535 - 158633625
62091
ENSAPLT00000014619
158571535 - 158633625
62091
ENSAPLT00000045117
158571535 - 158633625
62091
ENSAPLT00000041955
158571535 - 158633625
62091