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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158623879_158625154_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158623879 - 158625154
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCAAT
U12 Branch Point Sequence:
AATCCAATGACC
Flanking Amino Acid:
AAILGAFKDMGPFEVPMSQI
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
69.6
41.1
Major BPS
63
0.32
1.2
70.7
33.4
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
35.5
-1.7
3.4
47.8
42.4
Minor BPS
47.8
-0.1
1.9
61.44
36.8

Associated Gene:

Gene:
TMEM255B
Ensembl Gene ID:
ENSAPLG00000014031
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014619
158571535 - 158633625
62091
ENSAPLT00000045117
158571535 - 158633625
62091
ENSAPLT00000041955
158571535 - 158633625
62091
ENSAPLT00000037000
158571535 - 158633625
62091