About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158625167_158628576_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
158625167 - 158628576

Intron Length:
3410

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTATGTACC

5'SS Class:
strong_major

3'SS Sequence:
CTGTGCTCAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TAATAAA

U12 Branch Point Sequence:
CTGTGCTCAACA

Flanking Amino Acid:
GAFKDMGPFEVPMSQIAFSA

Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.5
0.91
0.8
80.6
31.9

Major BPS
70.8
0.52
1
70.6
31.6

Major PPT
67.9
0.4
1
62.2
38.7

Minor 5ss
43.1
-0.8
2.4
55.1
42.2

Minor BPS
54.3
0.13
2
67.23
45.3

Associated Gene:

Gene:
TMEM255B

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

158571535 - 158633625
62091

158571535 - 158633625
62091

158571535 - 158633625
62091

158571535 - 158633625
62091