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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158642072_158642976_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158642072 - 158642976
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTATAG
Flanking Amino Acid:
RGFAVFNLTYMQPSSGNETK
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
92
0.95
0.6
88.5
21.2
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
63.5
0.29
1.8
72.21
40.6

Associated Gene:

Gene:
GAS6
Ensembl Gene ID:
ENSAPLG00000013696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014318
158615616 - 158672662
57047