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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158643146_158644210_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158643146 - 158644210
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAA
U12 Branch Point Sequence:
TGCAGTTTAAGG
Flanking Amino Acid:
PFKTKDLVLPINPRLDGCMR
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.4
41.2
Major BPS
63.3
0.33
1.1
55.4
41.7
Major PPT
80.2
0.68
0.8
73.6
37
Minor 5ss
38.2
-1.3
2.7
49.6
40.1
Minor BPS
44.7
-0.5
2.1
48.03
45.5

Associated Gene:

Gene:
GAS6
Ensembl Gene ID:
ENSAPLG00000013696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014318
158615616 - 158672662
57047