About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158659740_158672168_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158659740 - 158672168
Intron Length:
12429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATAAAT
Flanking Amino Acid:
REVFENDPETEYFYPKYLDC
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61
46.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
86.4
0.82
0.7
80.7
24.7
Minor 5ss
43.7
-0.7
2.9
56.4
47.8
Minor BPS
57.5
0.31
2
81.52
38.8

Associated Gene:

Gene:
GAS6
Ensembl Gene ID:
ENSAPLG00000013696
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014318
158615616 - 158672662
57047