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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158679079_158680711_F

Intron Information:

Intron Rank:
125069
Intron Class:
major
Intron Phase:
Intron Coordinates:
158679079 - 158680711
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTATTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
61.4
40
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
34.8
-1.7
3.4
46.7
48.7
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046062
158676800 - 158680783
3984