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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15871206_15883421_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15871206 - 15883421
Intron Length:
12216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTCTTTTTATT
Flanking Amino Acid:
MLEELVSRIDEQVHVHLDQH
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.9
77.7
36
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
55.6
0.26
1.6
73.31
37.6

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865