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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158712720_158713460_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158712720 - 158713460
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTAACCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTTCCTAACCC
Flanking Amino Acid:
DNTPGCTPCTGGLPANIQLD
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
76.9
38.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
73.2
0.52
0.9
65.2
35.9
Minor 5ss
36.4
-1.5
3.3
43.8
43.8
Minor BPS
60.5
0.31
2
73.88
43.5

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033795
158710463 - 158811447
100985
ENSAPLT00000019147
158710463 - 158811255
100793
ENSAPLT00000013671
158710463 - 158811255
100793