About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158722984_158723612_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158722984 - 158723612
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATCCATTTAATC
Flanking Amino Acid:
NLFQLTPHHPDPQTSRTLTL
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
0.7
76.6
32
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
56.7
0.19
1.5
62.94
36.7

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013671
158710463 - 158811255
100793
ENSAPLT00000033795
158710463 - 158811447
100985
ENSAPLT00000019147
158710463 - 158811255
100793