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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158723720_158724465_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158723720 - 158724465
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
LRESAAKRFQGDLDVRYTAV
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.6
0.76
0.8
82
28.5
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033795
158710463 - 158811447
100985
ENSAPLT00000019147
158710463 - 158811255
100793
ENSAPLT00000013671
158710463 - 158811255
100793