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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158725211_158726113_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158725211 - 158726113
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATATATTAATT
Flanking Amino Acid:
QVTLKPIIDEICQVHKPCEI
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
58.6
0.35
1.6
73.49
36.9

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013671
158710463 - 158811255
100793
ENSAPLT00000033795
158710463 - 158811447
100985