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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158729979_158733320_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158729979 - 158733320
Intron Length:
3342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTATTACA
Flanking Amino Acid:
DVDEVDKMEIRVDLWNASNL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90
0.9
0.7
84.9
28.3
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
62.6
0.39
1.9
80.4
34.9

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033795
158710463 - 158811447
100985
ENSAPLT00000019147
158710463 - 158811255
100793
ENSAPLT00000013671
158710463 - 158811255
100793