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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158739095_158754431_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158739095 - 158754431
Intron Length:
15337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGACTT
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGTCTGCATCT
Flanking Amino Acid:
TGVVCHKLATRVLECQGLPI
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
66.8
44.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80.7
0.69
0.9
73.5
41.9
Minor 5ss
37
-1.5
3.6
57.3
46.8
Minor BPS
45.9
-0.2
2.4
71.59
45.7

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019147
158710463 - 158811255
100793
ENSAPLT00000013671
158710463 - 158811255
100793
ENSAPLT00000033795
158710463 - 158811447
100985