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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158764852_158774374_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158764852 - 158774374
Intron Length:
9523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATGTCTTAAACT
Flanking Amino Acid:
RDVFRRDSIIGKVAIQKEDL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
86.1
0.81
0.8
77.7
40.6
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
68.1
0.65
1.6
81.85
40.1

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033795
158710463 - 158811447
100985
ENSAPLT00000019147
158710463 - 158811255
100793
ENSAPLT00000013671
158710463 - 158811255
100793