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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158774479_158784089_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
158774479 - 158784089
Intron Length:
9611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTACCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTACCC
Flanking Amino Acid:
FRTKIVEKSLCPFYGEDFYC
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.8
81.3
35.4
Minor 5ss
35.4
-1.7
3.1
46.5
42.9
Minor BPS
65.1
0.45
1.6
74.15
36.9

Associated Gene:

Gene:
RASA3
Ensembl Gene ID:
ENSAPLG00000012988
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033795
158710463 - 158811447
100985
ENSAPLT00000019147
158710463 - 158811255
100793
ENSAPLT00000013671
158710463 - 158811255
100793