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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15883550_15923569_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15883550 - 15923569
Intron Length:
40020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTTAAAT
Flanking Amino Acid:
CTIRLWDTYQSEPEGFSHFH
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
65.8
0.57
1.4
76.07
41.1

Associated Gene:

Gene:
TBC1D22A
Ensembl Gene ID:
ENSAPLG00000004220
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004380
15793598 - 15959462
165865