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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158851204_158851907_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
158851204 - 158851907
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GCTGTCTTAATT
Flanking Amino Acid:
HALRSRKLDKLYEACRYLAA
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
85.4
0.8
0.8
77.4
36.3
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
67.4
0.63
1.4
75.64
41.8

Associated Gene:

Gene:
CDC16
Ensembl Gene ID:
ENSAPLG00000012294
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012884
158849217 - 158867417
18201