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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_158856819_158858360_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
158856819 - 158858360
Intron Length:
1542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTAATATTC
Flanking Amino Acid:
GTLVELNKANELFYLSHKLV
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80
0.68
0.9
76
32.5
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
45.9
-0.3
2
62.52
36.8

Associated Gene:

Gene:
CDC16
Ensembl Gene ID:
ENSAPLG00000012294
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012884
158849217 - 158867417
18201